Historical Collections of Tropical Marine Mammals Are an Excellent Resource for Ancient DNA

The ability to predict ancient DNA sequencing success in natural history collections is critical to reducing the amount of destructive sampling of a finite resource. So far, studies investigating such success have predominantly focused on taxa with ranges restricted to temperate or cold environments at northern latitudes, which likely aids DNA preservation. Here, we report remarkably high aDNA sequencing success in Sirenia, herbivorous marine mammals of which the distribution is currently constrained to the global tropics. We investigate 91 samples from 85 specimens comprising all four contemporary species and one extinct species, comparing different sample types (cranial/post-cranial bone, skin and cartilage), species, collections, and material age. We obtained remarkably high (e.g., > 20%) endogenous DNA preservation for the majority (e.g., ~57% percent) of samples. Sequencing success was linked to sample type, with cranial bones (including petrous and tympanic bones) yielding significantly higher endogenous DNA. Additionally, we obtained variable, but potentially superior DNA results for preserved cartilage and hide samples that can be associated with historical bone. Although such tissue is not always present, this type of material is easy to sample, with very limited destructive impacts on the associated bones, and we therefore highlight its untapped potential as a source of DNA. Overall, our results show the high success of ancient DNA retrieval from historical collections of species with a tropical distribution, expanding on the types of specimens that are available for temporal genomic analyses

Cite this article:

Furness, Lydia Hildebrand, et al. “Historical Collections of Tropical Marine Mammals Are an Excellent Resource for Ancient DNA.” Molecular Ecology Resources 25, no. 7 (2025). https://doi.org/10.1111/1755-0998.70015

Resources by the same authors

The medieval church at Hvalsey in the Eastern Settlement

Walrus ivory trade and the abandonment of Norse Greenland

Examples of carved medieval walrus skulls

Tracing the origins of Atlantic walrus ivory through ancient DNA analyses

Sea Ivories

Havets Elfenbein / Sea Ivories

The equal-distance line (45°W) separates the Eastern and Western stocks for management purposes

Five millennia of mitonuclear discordance in Atlantic bluefin tuna identified using ancient DNA

Geographical location of the archaeological Atlantic cod specimens collected from two archaeological sites

Tracing 600 years of long-distance Atlantic cod trade in medieval and post-medieval Oslo using stable isotopes and ancient DNA

Distinct Indo-Pacific population structure of D. dugon revealed by historical mitogenomes

Population structure of Dugong dugon across the Indo-Pacific revealed by historical mitogenomes

Walrus Cranium

Archaeological evidence of resource utilisation of walrus over the past two millennia: A systematic review protocol

Archaeological evidence of resource utilisation of the great whales over the past two millennia: A systematic review protocol

Archaeological evidence of resource utilisation of the great whales over the past two millennia: A systematic review protocol

grey whale

Dating the first historic extirpation of a whale species: The demise of the grey whale (Eschrichtius robustus) in the eastern North Atlantic

zooarchaeology_whaling

The prelude to industrial whaling: Identifying the targets of ancient European whaling using zooarchaeology and collagen mass-peptide fingerprinting